A living organism can be seen as a tool designed to perform specific functions, while both living and non-living matter represent distinct manifestations of nature. This work proposes considering living and non-living matter as physical systems, integrating existing scientific and technological advancements in the fields of physics, biology, and computer science. It suggests that scientific and technological developments in physical systems can also be applied to biological systems. The work addresses issues related to coding within living organisms and physical systems, and explores potential models for their functioning. The use of the golden ratio in living organisms and the potential benefits of applying these codes to physical systems are examined. Additionally, the refinement of physical quantities using the approaches discussed is addressed. Key issues in the modelling of living matter are highlighted, and various approaches to addressing these challenges are explored. The binary encoding and encoding based on π, e, and the golden ratio are considered.