The education system is an auxiliary device for modern system analysis and research, but it lacks intelligence in the design process, which can affect the overall optimization of the system. However, how to classify and analyze the system as a whole, as well as make comprehensive judgments on the system, is currently a research problem. This article proposes an intelligent method to comprehensively combine the system structure and data content to form an effective system correlation, promote the comprehensive development of the system, and improve its operational efficiency by 45% to 60%. It is found that intelligent methods can not only improve the overall integrity of the system, but also optimize the internal structure of the system, enhance system compatibility, and promote the development of the education system.