Investigating Voxel-Level Brain Age Prediction as a Pretext Task for Brain MRI Segmentation
摘要
To address the challenge of few annotated datasets for training brain magnetic resonance imaging (MRI) segmentation models, we propose to use voxel-level brain age prediction as a domain-specific pretext task for self-supervised learning before adapting models to a segmentation downstream task. We combined publicly available T1-weighted, normative brain MRI datasets to create a large (N = 1,710), representative dataset with a balanced distribution across age groups and sexes, minimizing potential biases in our model. We then compared three state-of-the-art architectures, Swin UNETR, UNETR, and UNET, on the voxel-level brain age prediction pretext task. Swin UNETR achieved the best performance with a mean absolute error (MAE) of 5.9 ± 4.4 years, outperforming UNETR (MAE: 7.2 ± 4.4 years) and UNET (MAE: 6.2 ± 4.2 years). Based on this performance, we selected Swin UNETR for a brain MRI segmentation downstream task to evaluate the effectiveness of the voxel-level brain age prediction as a self-supervised learning pretext task. We fine-tuned it and compared its performance against two baselines: (1) training from scratch and (2) fine-tuning a model pre-trained on an image inpainting task, a non-domain-specific pretext task. The Swin UNETR model pre-trained on voxel-level brain age prediction achieved the highest Dice coefficient on an out-of-distribution test set and performed comparably to the inpainting-pretrained model on an in-distribution test set. These results demonstrate the potential of voxel-level brain age prediction as a domain-specific pretext task for self-supervised learning in neuroimaging, improving segmentation performance, especially in challenging, low-data scenarios.