Pet owners are increasingly becoming conscious of their pet’s necessities and are paying more attention to their overall wellness. The well-being of their pets is intricately linked to their own emotional and physical well-being. Some veterinary system solutions are emerging to provide proactive healthcare options for pets. One such solution offers the continuous monitoring of a pet’s activity through accelerometer tracking devices. Based on data collected by this application, in this paper, we study different time aggregation and three unsupervised machine learning techniques to identify anomalies in pet behaviour data. Specifically, three algorithms, Isolation Forest, Local Outlier Factor, and K-Nearest Neighbour, with various thresholds to differentiate between normal and abnormal events. Results conducted on ten pets (five cats and five dogs) show that the most effective approach is to use daily data divided into periods. Moreover, the Local Outlier Factor is the best algorithm for detecting anomalies when prioritizing the identification of true positives. However, it also produces a high false positive ratio.