Scholarlink

Background <p>Seed dormancy and size are two crucial traits influencing crop yield, and they have undergone strong selection during cereal domestication and improvement. However, the genetic basis underlying the antagonistic effects between seed dormancy and seed size remains poorly understood.</p> Results <p>Based on genome-wide association study, we perform a comprehensive comparative analysis of 545 global wheat accessions to dissect the genetic architecture of these two traits during wheat improvement. We detect a strong negative correlation between the accumulation of favorable alleles for seed dormancy and the accumulation of favorable alleles for seed size. At the wheat genome level, a set of SNPs harboring&#xa0;antagonistic alleles explain up to 26.56% and 47.21% of the phenotypic variation for seed dormancy and seed size, respectively. In contrast, a set of SNPs with synergistic alleles account for only 0.54% and 1.12% of the variation in both traits. During wheat breeding improvement, favorable alleles associated with increased seed size are preferentially selected, resulting in a compromise in seed dormancy. Under different climate conditions, the frequencies of haplotypes of the pleiotropic genes with antagonistic effects and synergistic loci collectively shape wheat diversity through balancing seed dormancy and seed size.</p> Conclusions <p>Our findings reveal the genetic architecture underlying the observed weakening of seed dormancy as seed size increases during wheat improvement, enabling further genome-informed cultivar breeding to balance and improve seed dormancy and seed size traits.</p>

错误：搜索内容不能为空，请输入英文关键词
错误：关键词超出字数限制，请精简
高级检索

Antagonistic effects of selection on alleles associated with seed size and seed dormancy in wheat

  • 期刊论文

  • 出版模式：

    开放获取

  • 发表日期：

    2025年9月25日

查看全文
  • Feilong Guo,
  • Changbin Yin,
  • Tian Li,
  • Sitong Liu,
  • Jiayu Dong,
  • Hao Jiang,
  • Yu Fang,
  • Jun Wei,
  • Yi Han,
  • Yu Li,
  • Hong Cao,
  • Yuting Ning,
  • Galal Khamis,
  • Xin Deng,
  • Ke Wang,
  • Jirui Wang,
  • Cuijun Zhang,
  • Fei Lu,
  • Yongxiu Liu

摘要

Background

Seed dormancy and size are two crucial traits influencing crop yield, and they have undergone strong selection during cereal domestication and improvement. However, the genetic basis underlying the antagonistic effects between seed dormancy and seed size remains poorly understood.

Results

Based on genome-wide association study, we perform a comprehensive comparative analysis of 545 global wheat accessions to dissect the genetic architecture of these two traits during wheat improvement. We detect a strong negative correlation between the accumulation of favorable alleles for seed dormancy and the accumulation of favorable alleles for seed size. At the wheat genome level, a set of SNPs harboring antagonistic alleles explain up to 26.56% and 47.21% of the phenotypic variation for seed dormancy and seed size, respectively. In contrast, a set of SNPs with synergistic alleles account for only 0.54% and 1.12% of the variation in both traits. During wheat breeding improvement, favorable alleles associated with increased seed size are preferentially selected, resulting in a compromise in seed dormancy. Under different climate conditions, the frequencies of haplotypes of the pleiotropic genes with antagonistic effects and synergistic loci collectively shape wheat diversity through balancing seed dormancy and seed size.

Conclusions

Our findings reveal the genetic architecture underlying the observed weakening of seed dormancy as seed size increases during wheat improvement, enabling further genome-informed cultivar breeding to balance and improve seed dormancy and seed size traits.