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Single Cell Atlas: a single-cell multi-omics human cell encyclopedia

  • Lu Pan,
  • Paolo Parini,
  • Roman Tremmel,
  • Joseph Loscalzo,
  • Volker M. Lauschke,
  • Bradley A. Maron,
  • Paola Paci,
  • Ingemar Ernberg,
  • Nguan Soon Tan,
  • Zehuan Liao,
  • Weiyao Yin,
  • Sundararaman Rengarajan,
  • Xuexin Li

摘要

Single-cell sequencing datasets are key in biology and medicine for unraveling insights into heterogeneous cell populations with unprecedented resolution. Here, we construct a single-cell multi-omics map of human tissues through in-depth characterizations of datasets from five single-cell omics, spatial transcriptomics, and two bulk omics across 125 healthy adult and fetal tissues. We construct its complement web-based platform, the Single Cell Atlas (SCA, www.singlecellatlas.org), to enable vast interactive data exploration of deep multi-omics signatures across human fetal and adult tissues. The atlas resources and database queries aspire to serve as a one-stop, comprehensive, and time-effective resource for various omics studies.