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Background <p>Immune exclusion contributes to heterogeneous benefit from immunotherapy in cervical squamous carcinoma, but the malignant epithelial state most closely associated with this phenotype and its tissue- and morphology-level correlates remain unclear. We investigated whether a lesion-grade-associated malignant epithelial state was linked to immune-excluded tissue architecture and could be translated across transcriptomic and pathology modalities.</p> Methods <p>We integrated single-cell RNA-seq discovery (GSE208653), spatial transcriptomic evaluation (GSE208654), bulk RNA-seq translation in primary squamous TCGA-CESC tumors, external whole-tumor evaluation in CGCI-HTMCP-CC, and whole-slide H&amp;E analysis of 259 slides from 250 TCGA patients. External immune-focused datasets, a local neoadjuvant immunotherapy-treated cervical squamous carcinoma cohort, and a representative pilot whole-section multiplex immunofluorescence were used as supportive layers.</p> Results <p>A basal-squamous stress keratinization (BSK) program was the malignant epithelial state most consistently associated with the cross-sectional normal–HSIL–squamous carcinoma spectrum. Across four spatial sections, BSK showed a section-consistent core-boundary-shell organization comprising a BSK-rich tumor core, a stromal-myeloid boundary, and a more peripheral lymphoid shell. In primary squamous TCGA-CESC tumors, this biology was translated most clearly into an epithelial-exclusion bulk state associated with fibro-myeloid niche enrichment and weaker engagement of inflamed/dysfunctional CD8 T-cell programs. Patient-level out-of-fold morphology scores from matched TCGA H&amp;E slides correlated positively with epithelial exclusion, supporting a detectable histologic correlate within the matched pathology arm. In a local 18-patient neoadjuvant immunotherapy-treated cohort, H&amp;E-derived morphology scores were associated with postoperative pathological response grade, providing exploratory clinical-pathology support rather than predictive validation. The exclusion-centered ordering was directionally preserved in CGCI-HTMCP-CC and aligned with stromal/EMT/TGFβ, angiogenesis, and more moderate gMDSC-related programs.</p> Conclusions <p>BSK marks an exclusion-associated cervical squamous carcinoma state that is spatially organized, measurable in bulk transcriptomes, and partially reflected in routine histology. These findings provide a human-data-derived translational framework for future immune-access stratification and prospective biomarker testing but do not establish BSK as a causal driver or validated predictor of immunotherapy response.</p>

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Cross-layer multiomic and digital pathology analysis identifies a malignant keratinization state linked to immune exclusion in cervical squamous carcinoma

  • 期刊论文

  • 出版模式：

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  • 发表日期：

    2026年7月9日

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  • Xiao Chen,
  • Dongmei Zhou,
  • Yiting Lin,
  • Wanzhen Lin,
  • Zuolian Xie,
  • Lijun Chen,
  • Linying Liu,
  • Yang Sun

摘要

Background

Immune exclusion contributes to heterogeneous benefit from immunotherapy in cervical squamous carcinoma, but the malignant epithelial state most closely associated with this phenotype and its tissue- and morphology-level correlates remain unclear. We investigated whether a lesion-grade-associated malignant epithelial state was linked to immune-excluded tissue architecture and could be translated across transcriptomic and pathology modalities.

Methods

We integrated single-cell RNA-seq discovery (GSE208653), spatial transcriptomic evaluation (GSE208654), bulk RNA-seq translation in primary squamous TCGA-CESC tumors, external whole-tumor evaluation in CGCI-HTMCP-CC, and whole-slide H&E analysis of 259 slides from 250 TCGA patients. External immune-focused datasets, a local neoadjuvant immunotherapy-treated cervical squamous carcinoma cohort, and a representative pilot whole-section multiplex immunofluorescence were used as supportive layers.

Results

A basal-squamous stress keratinization (BSK) program was the malignant epithelial state most consistently associated with the cross-sectional normal–HSIL–squamous carcinoma spectrum. Across four spatial sections, BSK showed a section-consistent core-boundary-shell organization comprising a BSK-rich tumor core, a stromal-myeloid boundary, and a more peripheral lymphoid shell. In primary squamous TCGA-CESC tumors, this biology was translated most clearly into an epithelial-exclusion bulk state associated with fibro-myeloid niche enrichment and weaker engagement of inflamed/dysfunctional CD8 T-cell programs. Patient-level out-of-fold morphology scores from matched TCGA H&E slides correlated positively with epithelial exclusion, supporting a detectable histologic correlate within the matched pathology arm. In a local 18-patient neoadjuvant immunotherapy-treated cohort, H&E-derived morphology scores were associated with postoperative pathological response grade, providing exploratory clinical-pathology support rather than predictive validation. The exclusion-centered ordering was directionally preserved in CGCI-HTMCP-CC and aligned with stromal/EMT/TGFβ, angiogenesis, and more moderate gMDSC-related programs.

Conclusions

BSK marks an exclusion-associated cervical squamous carcinoma state that is spatially organized, measurable in bulk transcriptomes, and partially reflected in routine histology. These findings provide a human-data-derived translational framework for future immune-access stratification and prospective biomarker testing but do not establish BSK as a causal driver or validated predictor of immunotherapy response.