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Background <p>Lysine-rich membrane associated <i>Plasmodium</i> helical interspersed subtelomeric gene (<i>phistb</i>) is a member of the <i>phist</i> family of genes which encodes exported proteins essential for the parasite’s survival within infected red blood cells. Recent studies suggest the <i>phistb</i> gene as a promising malaria vaccine candidate, however, its genetic diversity remains understudied. This study assessed the genetic diversity of the <i>phistb</i> gene in regions of varying malaria transmission aiming to generate data and improve our understanding of this promising malaria vaccine candidate gene.</p> Methods <p>Genomic data from 1472 <i>Plasmodium falciparum</i> samples from Tanzania, Kenya, Uganda, and Ethiopia were retrieved in variant Calling file format (VCF) format from the MalariaGEN Pf7 database. Variants were filtered to include only biallelic Single Nucleotide Polymorphism (SNPs) with Variant Quality Score Log- Odds (VQSLOD) &gt; 1 and “PASS” status. Genetic diversity, differentiation, and selection signatures were analyzed using population genetics metrics.</p> Results <p>After filtering, 1312 samples were retained. Wright’s inbreeding coefficient (Fws) showed that 875 (66.7%) samples had monoclonal infections, with the highest proportion of monoclonal infections in Ethiopia (95.3%), followed by Tanzania (67.2%), Kenya (65.7%), and Uganda (50%). Among the 875 monoclonal samples, 88 haplotypes were identified, with Hap_1 (renamed PF3D7)&#xa0;and Hap_13 comprising 37.9 and 21.5 of the samples, respectively. Nucleotide and haplotype diversity were relatively higher in Kenya with 0.097, and 0.88 respectively, compared to the other study populations. The overall fixation index (Fst) was &lt; 0.05, and Principal Component Analysis revealed no clear population sub-structure among countries. Negative Tajima’s D values in Tanzania, Kenya, and Ethiopia indicated an excess of low-frequency alleles.</p> Conclusion <p>This study reports low genetic diversity of the <i>phistb</i> gene in the four countries despite varying malaria transmission intensities among them, thus making it a suitable candidate gene for malaria vaccine. Further studies should be conducted to assess individual antibodies recognition of the <i>phistb</i> variants and the ability to elicit cross reactivity to further support its potential as a vaccine candidate.</p>

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Genetic diversity of Plasmodium falciparum helical interspersed subtelomeric (phistb) gene in Tanzania and neighboring countries

  • 期刊论文

  • 出版模式：

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  • 发表日期：

    2026年6月24日

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  • Ruth B. Mbwambo,
  • Dativa Pereus,
  • Catherine Bakari,
  • Ramadhan Moshi,
  • Angelina J. Kisambale,
  • Rashid A. Madebe,
  • Seth D. Misago,
  • Celine I. Mandara,
  • Beatus Lyimo,
  • Daniel Mbwambo,
  • Sijenunu Aaron,
  • Abdallah Lusasi,
  • Samwel Lazaro,
  • Gerald Juma,
  • Benard W. Kulohoma,
  • Deus S. Ishengoma

摘要

Background

Lysine-rich membrane associated Plasmodium helical interspersed subtelomeric gene (phistb) is a member of the phist family of genes which encodes exported proteins essential for the parasite’s survival within infected red blood cells. Recent studies suggest the phistb gene as a promising malaria vaccine candidate, however, its genetic diversity remains understudied. This study assessed the genetic diversity of the phistb gene in regions of varying malaria transmission aiming to generate data and improve our understanding of this promising malaria vaccine candidate gene.

Methods

Genomic data from 1472 Plasmodium falciparum samples from Tanzania, Kenya, Uganda, and Ethiopia were retrieved in variant Calling file format (VCF) format from the MalariaGEN Pf7 database. Variants were filtered to include only biallelic Single Nucleotide Polymorphism (SNPs) with Variant Quality Score Log- Odds (VQSLOD) > 1 and “PASS” status. Genetic diversity, differentiation, and selection signatures were analyzed using population genetics metrics.

Results

After filtering, 1312 samples were retained. Wright’s inbreeding coefficient (Fws) showed that 875 (66.7%) samples had monoclonal infections, with the highest proportion of monoclonal infections in Ethiopia (95.3%), followed by Tanzania (67.2%), Kenya (65.7%), and Uganda (50%). Among the 875 monoclonal samples, 88 haplotypes were identified, with Hap_1 (renamed PF3D7) and Hap_13 comprising 37.9 and 21.5 of the samples, respectively. Nucleotide and haplotype diversity were relatively higher in Kenya with 0.097, and 0.88 respectively, compared to the other study populations. The overall fixation index (Fst) was < 0.05, and Principal Component Analysis revealed no clear population sub-structure among countries. Negative Tajima’s D values in Tanzania, Kenya, and Ethiopia indicated an excess of low-frequency alleles.

Conclusion

This study reports low genetic diversity of the phistb gene in the four countries despite varying malaria transmission intensities among them, thus making it a suitable candidate gene for malaria vaccine. Further studies should be conducted to assess individual antibodies recognition of the phistb variants and the ability to elicit cross reactivity to further support its potential as a vaccine candidate.