Scholarlink

Objectives <p>This genomic sequence for the purple-hinged rock scallop, <i>Crassadoma gigantea</i>, is a substantial improvement over currently available NCBI genomes for the species and will be an important resource for future genomic research, including ongoing and future population genetic studies. Purple-hinged rock scallops are found along the west coast of North America with a native range from Northern Alaska to Northern Mexico and found to depths of up to ~ 50&#xa0;m. While not commercially harvested, this species is harvested recreationally and is a candidate of interest for aquaculture and conservation.</p> Data description <p>The draft genome for C. gigantea is 817.3&#xa0;MB, containing 7,183 scaffolds (contig N50 = 287.9 Kb, scaffold N50 = 965.5 Kb). Benchmarking Universal Single-Copy Orthologs (BUSCO) analysis using the 5295 genes in the mollusca_odb10 database had a 93.3% completeness value (92.7% single, 0.6% duplicated). Repeat elements made up 32.23% of the genome. MetaEuk reference-based discovery identified and annotated 23,409 unique protein sequences. Functional annotation was completed by Pannzer2. This assembly will contribute to the ongoing population genetic research on this species.</p>

错误：搜索内容不能为空，请输入英文关键词
错误：关键词超出字数限制，请精简
高级检索

Draft genome assembly for the purple-hinged rock scallop (Crassadoma gigantea)

  • 期刊论文

  • 出版模式：

    开放获取

  • 发表日期：

    2025年5月28日

查看全文
  • Hayley Goss,
  • Paige Miller,
  • Susan F. Zaleski,
  • Robert J. Miller,
  • Donna M. Schroeder,
  • Henry M. Page

摘要

Objectives

This genomic sequence for the purple-hinged rock scallop, Crassadoma gigantea, is a substantial improvement over currently available NCBI genomes for the species and will be an important resource for future genomic research, including ongoing and future population genetic studies. Purple-hinged rock scallops are found along the west coast of North America with a native range from Northern Alaska to Northern Mexico and found to depths of up to ~ 50 m. While not commercially harvested, this species is harvested recreationally and is a candidate of interest for aquaculture and conservation.

Data description

The draft genome for C. gigantea is 817.3 MB, containing 7,183 scaffolds (contig N50 = 287.9 Kb, scaffold N50 = 965.5 Kb). Benchmarking Universal Single-Copy Orthologs (BUSCO) analysis using the 5295 genes in the mollusca_odb10 database had a 93.3% completeness value (92.7% single, 0.6% duplicated). Repeat elements made up 32.23% of the genome. MetaEuk reference-based discovery identified and annotated 23,409 unique protein sequences. Functional annotation was completed by Pannzer2. This assembly will contribute to the ongoing population genetic research on this species.