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<p>Super-pangenomes expand species-level pan-genomes to genus-wide frameworks, which integrate cultivated and wild genomes to capture hidden diversity. Super-pangenomes reduce reference bias, discover structural variations, rare alleles, and regulatory elements which drive stress adaptation and trait evolution. By leveraging QTL/GWAS and panomics, super-pangenomes fast-track breeding of stress-smart and high-yielding crops. This review highlights advances, challenges, and prospects, which position super-pangenomes as a “surprise package” for sustainable, food-secure agriculture.</p>

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From the genome to super-pangenome: a new paradigm for accelerated crop improvement

  • 期刊论文

  • 出版模式：

    开放获取

  • 发表日期：

    2026年2月2日

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  • Ali Raza,
  • Yiran Li,
  • Farkhandah Jan,
  • Cassandria Geraldine Tay Fernandez,
  • Reyazul Rouf Mir,
  • Zhangli Hu,
  • Rajeev K. Varshney

摘要

Super-pangenomes expand species-level pan-genomes to genus-wide frameworks, which integrate cultivated and wild genomes to capture hidden diversity. Super-pangenomes reduce reference bias, discover structural variations, rare alleles, and regulatory elements which drive stress adaptation and trait evolution. By leveraging QTL/GWAS and panomics, super-pangenomes fast-track breeding of stress-smart and high-yielding crops. This review highlights advances, challenges, and prospects, which position super-pangenomes as a “surprise package” for sustainable, food-secure agriculture.