<p>The correlation function observed in high-energy collision experiments encodes critical information about the emitted source and hadronic interactions. While the proton-proton interaction potential is well constrained by nucleon-nucleon scattering data, these measurements offer a unique avenue to investigate the proton-emitting source, reflecting the dynamical properties of the collisions. In this context, the understanding of other hadronic interactions such as hyperon-nucleon remains limited. In this work, we present an unbiased approach to reconstruct proton-emitting sources from experimental correlation functions. Within an automatic differentiation framework, we parameterize the source functions with deep neural networks, to compute correlation functions. This approach achieves a lower chi-squared value compared to conventional Gaussian source functions and captures the long-tail behavior, in qualitative agreement with simulation predictions. We finally apply our method to extract hyperon-nucleon correlations.</p>