<p>Rice is a significant food that plays a vital part in delivering nutrition to the world’s population. Hence, approaches for assessing rice yield have received considerable study. The amount of rice seedlings (density) is a main agronomic module. It is related to harvest and also plays a significant part in the survival rate. Unmanned Aerial Vehicles (UAVs) are prepared with lightweight sensors, which creates a substantial effect in the field of crop phenotyping. The UAV was effectively used to measure germination rates and density in an accurate and effective method that would otherwise be laborious and expensive to obtain when compared to manual valuation. In image processing, mainly over the applications of deep learning (DL) models, there was a notable academic search for the value of UAV images for varied agricultural monitoring tasks. This work develops a Rice Seedlings for Assessing Germination Rates and Density using Aerial Images with Hierarchical Deep Network (RSAGRD-AIHDN) model. The goal of this paper is to assess germination rates and seedling density in rice fields using remote sensing (RS) or UAV-based imaging techniques for improved crop establishment monitoring. To accomplish that, the image pre-processing stage is initially applied with dual stages, such as image acquisition and pre-processing, to ensure high-quality and consistent inputs. Furthermore, the RSAGRD-AIHDN model employs the ConvNeXt method for the feature extraction process. For rice seed detection and classification, the RSAGRD-AIHDN model implements ensemble models, namely stacked autoencoder (SAE), bidirectional temporal convolution network (BiTCN), and Deep Q-Learning (DQL). The experimental assessment of the RSAGRD-AIHDN method is performed under the aerial dataset of rice seedlings. The experimentation of the RSAGRD-AIHDN method portrayed a superior accuracy value of 98.68% over existing approaches.</p>