<p>Electron microscopy (EM) of rhinovirus A2 (RV-A2) incubated in Na<sup>+</sup> phosphate buffer (pH 7.6) for 12&#xa0;h at 25&#xa0;°C revealed partial fragmentation, whereas upon incubation in K<sup>+</sup> phosphate buffer, RV-A2 appeared intact. In buffers adjusted to pH 5.8, these differences became more pronounced; acidic Na<sup>+</sup> phosphate buffer promoted disintegration of the particles, whereas in acidic K<sup>+</sup> phosphate buffer, the virus appeared like native. Incubation in the acidic buffers for one hour at 4&#xa0;°C followed by neutralisation resulted in the respective formation of non-infectious A particles (in Na<sup>+</sup>) and a non-infectious novel uncoating intermediate (in K<sup>+</sup>), which we termed ‘E0 particle’. Negative staining EM revealed phosphotungstate penetration into A particles, but not into E0 particles. Cryo-EM image reconstruction of the E0 particle showed clear differences between A and E0 particles; like native virus, E0 contained VP4 and a pocket factor. Native RV-A2 RNA cores, obtained by gentle proteinase-K digestion in K<sup>+</sup> and Na<sup>+</sup> phosphate buffer, respectively, differed in accessibility of dsRNA regions, detected by PaSTRy. Variance in RNA compactness observed in K<sup>+</sup> versus Na<sup>+</sup> phosphate buffer was confirmed by rotary shadowing EM; in K<sup>+</sup> phosphate buffer, the RNA remained condensed while, in Na<sup>+</sup> phosphate buffer, distinct unfolding stages were apparent.</p>

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New rhinovirus uncoating intermediate reveals how sodium versus potassium ions influence RNA release

  • Antonio Real-Hohn,
  • Dieter Blaas

摘要

Electron microscopy (EM) of rhinovirus A2 (RV-A2) incubated in Na+ phosphate buffer (pH 7.6) for 12 h at 25 °C revealed partial fragmentation, whereas upon incubation in K+ phosphate buffer, RV-A2 appeared intact. In buffers adjusted to pH 5.8, these differences became more pronounced; acidic Na+ phosphate buffer promoted disintegration of the particles, whereas in acidic K+ phosphate buffer, the virus appeared like native. Incubation in the acidic buffers for one hour at 4 °C followed by neutralisation resulted in the respective formation of non-infectious A particles (in Na+) and a non-infectious novel uncoating intermediate (in K+), which we termed ‘E0 particle’. Negative staining EM revealed phosphotungstate penetration into A particles, but not into E0 particles. Cryo-EM image reconstruction of the E0 particle showed clear differences between A and E0 particles; like native virus, E0 contained VP4 and a pocket factor. Native RV-A2 RNA cores, obtained by gentle proteinase-K digestion in K+ and Na+ phosphate buffer, respectively, differed in accessibility of dsRNA regions, detected by PaSTRy. Variance in RNA compactness observed in K+ versus Na+ phosphate buffer was confirmed by rotary shadowing EM; in K+ phosphate buffer, the RNA remained condensed while, in Na+ phosphate buffer, distinct unfolding stages were apparent.