Scholarlink

<p>Soil eukaryotes, including fungi, protists, plants, and animals, are central to biosphere functioning and resilience. The Global Standardised Soil Eukaryome Dataset (GloSED) is the first dataset encompassing the entire spectrum of soil eukaryotes, covering 4,063 sampling sites in 121 countries on all continents, revealing nearly one million operational taxonomic units. All samples were collected and analysed using a standardised protocol minimizing technical biases. Long-read sequencing of full-length ITS and 18S-V9 regions provide broad taxonomic coverage and high-resolution identification supported by specialist curation of “dark taxa”. A rigorous bioinformatic processing ensures against homopolymer errors, PCR-mediated chimeras, and index switching providing high data quality. The dataset is supported by raw sequences and an open-source containerised workflow for reproducible analyses. The samples are accompanied by land-cover description and directly measured soil pH, δ<sup>13</sup>C, δ<sup>15</sup>N, as well as P, K, Ca, Mg, and total C and N contents. GloSED is the first database that enables ecological and biogeographic studies of entire soil eukaryotic communities from local to global scales.</p>

错误：搜索内容不能为空，请输入英文关键词
错误：关键词超出字数限制，请精简
高级检索

Global dataset of soil eukaryotic communities created with a uniform protocol and long read sequencing

  • 期刊论文

  • 出版模式：

    开放获取

  • 发表日期：

    2026年5月5日

查看全文
  • Vladimir Mikryukov,
  • Olesya Dulya,
  • Kessy Abarenkov,
  • Sten Anslan,
  • Niloufar Hagh-Doust,
  • Victoria Prins,
  • Kristel Panksep,
  • Sergei Põlme,
  • Khalid S. Ibrahim,
  • Mo Bahram,
  • Kalev Adamson,
  • Ahto Agan,
  • Talaat Ahmed,
  • Juha M. Alatalo,
  • Felipe E. Albornoz,
  • Abdullah MS Al-Hatmi,
  • Saad Alkahtani,
  • Julieta Alvarez-Manjarrez,
  • Jelena Ankuda,
  • Alexandre Antonelli,
  • Manikandan Ariyan,
  • Kęstutis Armolaitis,
  • Farzad Aslani,
  • Isabel C. Barrio,
  • Marijn Bauters,
  • Elisabeth Machteld Biersma,
  • Krišs Bitenieks,
  • Gregory Bonito,
  • Francis Q. Brearley,
  • Kari Anne Bråthen,
  • Franz Buegger,
  • Klaus Butterbach-Bahl,
  • Miklós Bálint,
  • Erin K. Cameron,
  • Fabiana Canini,
  • Rebeca Casique-Valdés,
  • Adriana Corrales,
  • Evgeny A. Davydov,
  • Eske De Crop,
  • André De Kesel,
  • Joseph Fovo Djeugap,
  • Rein Drenkhan,
  • Camila Duarte Ritter,
  • Sergey V. Dudov,
  • Mikk Espenberg,
  • Ongua Fanuel,
  • Vladimir E. Fedosov,
  • Luke Florence,
  • Brendan R. Furneaux,
  • Ariadne N. M. Furtado,
  • Sanni Färkkilä,
  • Natalia S. Gamova,
  • Roberto Garibay-Orijel,
  • József Geml,
  • Soumya Ghosh,
  • Roberto Godoy,
  • Daniyal Gohar,
  • Marieka Gryzenhout,
  • Ayad H. Hasan,
  • Amr H. Hashem,
  • Jacob Heilmann-Clausen,
  • Terry W. Henkel,
  • Indrek Hiiesalu,
  • Inga Hiiesalu,
  • Mahdieh S. Hosseyni Moghaddam,
  • Kevin D. Hyde,
  • Karina Inostroza,
  • Khalil Kariman,
  • Elina Karimullina,
  • Sebastian Kepfer-Rojas,
  • Abdul Nasir Khalid,
  • Darta Klavina,
  • Petr Kohout,
  • Yuri N. Korotkov,
  • John Y. Kupagme,
  • Olavi Kurina,
  • Louis James Lamit,
  • Adebola Azeez Lateef,
  • Njouonkou André Ledoux,
  • Young Woon Lim,
  • Jose G. Maciá-Vicente,
  • Kristaps Makovskis,
  • Sebastián Martínez,
  • César Marín,
  • Peter Meidl,
  • Peter E. Mortimer,
  • Sunil Mundra,
  • Victoria Naluyange,
  • Tarquin Netherway,
  • Kevin K. Newsham,
  • Eduardo Nouhra,
  • Casper Nyamukondiwa,
  • Vincent Nteziryayo,
  • Dennis M. W. Ochieno,
  • Jane Oja,
  • Vladimir G. Onipchenko,
  • Eveli Otsing,
  • Mustafa Nadhim Owaid,
  • Meike Piepenbring,
  • Polina Pochekutova,
  • Maihyra Marina Pombo,
  • Karin Pritsch,
  • Rasmus Puusepp,
  • Jaan Pärn,
  • Kadri Põldmaa,
  • Saleh Rahimlou,
  • Andrea C. Rinaldi,
  • Oscar Rojas,
  • Tomas Roslin,
  • Kadri Runnel,
  • Elisabeth Rähn,
  • Malka Saba,
  • Alessandro Saitta,
  • Talal Sabhan Salih,
  • Joosep Sarapuu,
  • Eduard Serrano,
  • Oscar Serrano,
  • Dipon Sharmah,
  • Cathy Sharp,
  • Maria W. Skalska-Tuomi,
  • Kassim Issifou Tchan,
  • Camille Truong,
  • Helga van der Merwe,
  • Linda L. P. Vanié-Léabo,
  • Aida M. Vasco-Palacios,
  • Annemieke Verbeken,
  • Lukáš Vlk,
  • Nalin N. Wijayawardene,
  • Jennifer L. Wood,
  • W. A. Erandi Yasanthika,
  • Nourou S. Yorou,
  • Geoffrey Zahn,
  • Irma Zettur,
  • Laura Zucconi,
  • Urmas Kõljalg,
  • Leho Tedersoo

摘要

Soil eukaryotes, including fungi, protists, plants, and animals, are central to biosphere functioning and resilience. The Global Standardised Soil Eukaryome Dataset (GloSED) is the first dataset encompassing the entire spectrum of soil eukaryotes, covering 4,063 sampling sites in 121 countries on all continents, revealing nearly one million operational taxonomic units. All samples were collected and analysed using a standardised protocol minimizing technical biases. Long-read sequencing of full-length ITS and 18S-V9 regions provide broad taxonomic coverage and high-resolution identification supported by specialist curation of “dark taxa”. A rigorous bioinformatic processing ensures against homopolymer errors, PCR-mediated chimeras, and index switching providing high data quality. The dataset is supported by raw sequences and an open-source containerised workflow for reproducible analyses. The samples are accompanied by land-cover description and directly measured soil pH, δ13C, δ15N, as well as P, K, Ca, Mg, and total C and N contents. GloSED is the first database that enables ecological and biogeographic studies of entire soil eukaryotic communities from local to global scales.