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<p>Invasive species pose a serious threat to ecosystems and biodiversity, leading to considerable economic losses for countries. The papaya mealybug (Paracoccus marginatus), is a prominent invasive pest that affects over 200 plant species and has been recorded in more than 60 countries and regions.Here, the chromosome-level genome of P. marginatus was assembled using PacBio and Hi-C technologies. The resulting genome, with a total size of 213.81 Mb, was organized into four chromosomes. The contig and scaffold N50 values were 20.2 Mb and 48.01 Mb, respectively. The genome assembly attained a BUSCO completeness score of 95.5%, and CEGMA analysis showed that 99.56% of the genome was thoroughly annotated. It includes 13,367 predicted protein-coding genes, with 49.26% of the assembly identified as repetitive sequences. This high-quality genome serves as a valuable resource for a range of research fields, such as population genetics, evolutionary studies, invasive species management, and comparative genomics within Hemiptera and other insect groups.</p>

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Chromosome-level genome assembly of Paracoccus marginatus based on PacBio and Hi-C technologies

  • 期刊论文

  • 出版模式：

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  • 发表日期：

    2025年5月29日

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  • Jiufeng Wei,
  • Jinying Xue,
  • Xuejie Shen,
  • Gaoxiang Zhang,
  • Qing Zhao,
  • Yunyun Lu,
  • Minmin Niu,
  • Wei Ji

摘要

Invasive species pose a serious threat to ecosystems and biodiversity, leading to considerable economic losses for countries. The papaya mealybug (Paracoccus marginatus), is a prominent invasive pest that affects over 200 plant species and has been recorded in more than 60 countries and regions.Here, the chromosome-level genome of P. marginatus was assembled using PacBio and Hi-C technologies. The resulting genome, with a total size of 213.81 Mb, was organized into four chromosomes. The contig and scaffold N50 values were 20.2 Mb and 48.01 Mb, respectively. The genome assembly attained a BUSCO completeness score of 95.5%, and CEGMA analysis showed that 99.56% of the genome was thoroughly annotated. It includes 13,367 predicted protein-coding genes, with 49.26% of the assembly identified as repetitive sequences. This high-quality genome serves as a valuable resource for a range of research fields, such as population genetics, evolutionary studies, invasive species management, and comparative genomics within Hemiptera and other insect groups.