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<p>Cultivated <i>Zizania latifolia</i>, commonly known as Jiaobai, was domesticated as a special form of a plant-fungus symbiont. It is one of the most popular aquatic vegetables endemic to East Asia. However, the absence of a reference genome has hindered research on this important vegetable. In this study, we sequenced and assembled a chromosome-level genome of Jiaobai, the size of which is 596.34 Mb with a contig N50 of 32.74 Mb by integrating PacBio, Illumina and chromosome conformation capture data. A total of 571.70 Mb (95.87%) of the assembled sequences were anchored onto 17 chromosomes and 36,286 gene models were predicted. This study provides valuable genomic resources for uncovering the mechanisms underlying plant-pathogenic fungus interactions and developing genomics-assisted breeding programs in Jiaobai.</p>

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Chromosome-level genome assembly of Jiaobai (Zizania latifolia, Poceace)

  • 期刊论文

  • 出版模式：

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  • 发表日期：

    2025年3月31日

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  • Yan Huang,
  • Yipeng Li,
  • Lingyun Wang,
  • Shangfa Zhang,
  • Linyan Li,
  • Ruiqi Song,
  • Wei Sheng,
  • Zhaisheng Zheng,
  • Xinyi Zhang,
  • Mengfei Yang,
  • Yingxiong Qiu

摘要

Cultivated Zizania latifolia, commonly known as Jiaobai, was domesticated as a special form of a plant-fungus symbiont. It is one of the most popular aquatic vegetables endemic to East Asia. However, the absence of a reference genome has hindered research on this important vegetable. In this study, we sequenced and assembled a chromosome-level genome of Jiaobai, the size of which is 596.34 Mb with a contig N50 of 32.74 Mb by integrating PacBio, Illumina and chromosome conformation capture data. A total of 571.70 Mb (95.87%) of the assembled sequences were anchored onto 17 chromosomes and 36,286 gene models were predicted. This study provides valuable genomic resources for uncovering the mechanisms underlying plant-pathogenic fungus interactions and developing genomics-assisted breeding programs in Jiaobai.