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<p>The short-faced mole (<i>Scaptochirus moschatus</i>) belonging to the family Talpidae in the order Eulipotyphla is a good model for studying adaptive evolution of mammals because of its morphological and ecological characteristics. However, the lack of genome of short-faced mole has hindered previous studies. In this study, we assembled the genome of the short-faced mole based on Illumina, PacBio HiFi and Hi-C sequencing, and acquired the genome of the short-faced mole with the size of 2.17 Gb. 99.6% of the assembled genome were identified as complete BUSCOs, including 90.7% as complete single-copy BUSCOs and 8.9% as complete duplicated BUSCOs. The assembled genome was anchored to 24 chromosomes with an anchor rate of 94.33%, of which the 24th chromosome (Chr 24) probably contained the X and Y chromosomes. A total of 21,139 coding genes were predicted, and 8.58 exons per gene were predicted.</p>

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Chromosome-level genome assembly of the short-faced mole (Scaptochirus moschatus)

  • 期刊论文

  • 出版模式：

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  • 发表日期：

    2025年3月3日

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  • Lei Chen,
  • Zenghao Gao,
  • Chao Xue,
  • Yue Zhao,
  • Di Xu,
  • Xiaohan Ma,
  • Yifan Zhang

摘要

The short-faced mole (Scaptochirus moschatus) belonging to the family Talpidae in the order Eulipotyphla is a good model for studying adaptive evolution of mammals because of its morphological and ecological characteristics. However, the lack of genome of short-faced mole has hindered previous studies. In this study, we assembled the genome of the short-faced mole based on Illumina, PacBio HiFi and Hi-C sequencing, and acquired the genome of the short-faced mole with the size of 2.17 Gb. 99.6% of the assembled genome were identified as complete BUSCOs, including 90.7% as complete single-copy BUSCOs and 8.9% as complete duplicated BUSCOs. The assembled genome was anchored to 24 chromosomes with an anchor rate of 94.33%, of which the 24th chromosome (Chr 24) probably contained the X and Y chromosomes. A total of 21,139 coding genes were predicted, and 8.58 exons per gene were predicted.