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ProHap enables human proteomic database generation accounting for population diversity

  • Jakub Vašíček,
  • Ksenia G. Kuznetsova,
  • Dafni Skiadopoulou,
  • Lucas Unger,
  • Simona Chera,
  • Luiza M. Ghila,
  • Nuno Bandeira,
  • Pål R. Njølstad,
  • Stefan Johansson,
  • Stefan Bruckner,
  • Lukas Käll,
  • Marc Vaudel

摘要

Amid the advances in genomics, the availability of large reference panels of human haplotypes is key to account for human diversity within and across populations. However, mass spectrometry-based proteomics does not benefit from this information. To address this gap, we introduce ProHap, a Python-based tool that constructs protein sequence databases from phased genotypes of reference panels. ProHap enables researchers to account for haplotype diversity in proteomic searches.