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Sustained human outbreak of a new MPXV clade I lineage in eastern Democratic Republic of the Congo

  • Emmanuel Hasivirwe Vakaniaki,
  • Cris Kacita,
  • Eddy Kinganda-Lusamaki,
  • Áine O’Toole,
  • Tony Wawina-Bokalanga,
  • Daniel Mukadi-Bamuleka,
  • Adrienne Amuri-Aziza,
  • Nadine Malyamungu-Bubala,
  • Franklin Mweshi-Kumbana,
  • Léandre Mutimbwa-Mambo,
  • Freddy Belesi-Siangoli,
  • Yves Mujula,
  • Edyth Parker,
  • Pauline-Chloé Muswamba-Kayembe,
  • Sabin S. Nundu,
  • Robert S. Lushima,
  • Jean-Claude Makangara-Cigolo,
  • Noella Mulopo-Mukanya,
  • Elisabeth Pukuta-Simbu,
  • Prince Akil-Bandali,
  • Hugo Kavunga,
  • Ombotimbe Abdramane,
  • Isabel Brosius,
  • Eugene Bangwen,
  • Koen Vercauteren,
  • Nadia A. Sam-Agudu,
  • Edward J. Mills,
  • Olivier Tshiani-Mbaya,
  • Nicole A. Hoff,
  • Anne W. Rimoin,
  • Lisa E. Hensley,
  • Jason Kindrachuk,
  • Cheryl Baxter,
  • Tulio de Oliveira,
  • Ahidjo Ayouba,
  • Martine Peeters,
  • Eric Delaporte,
  • Steve Ahuka-Mundeke,
  • Emma L. Mohr,
  • Nancy J. Sullivan,
  • Jean-Jacques Muyembe-Tamfum,
  • Jean B. Nachega,
  • Andrew Rambaut,
  • Laurens Liesenborghs,
  • Placide Mbala-Kingebeni

摘要

Outbreaks of monkeypox (mpox) have historically resulted from zoonotic spillover of clade I monkeypox virus (MPXV) in Central Africa and clade II MPXV in West Africa. In 2022, subclade IIb caused a global epidemic linked to transmission through sexual contact. Here we describe the epidemiological and genomic features of an mpox outbreak in a mining region in eastern Democratic Republic of the Congo, caused by clade I MPXV. Surveillance data collected between September 2023 and January 2024 identified 241 suspected cases. Genomic analysis demonstrates a distinct clade I lineage divergent from previously circulating strains in the Democratic Republic of the Congo. Of the 108 polymerase chain reaction-confirmed mpox cases, the median age of individuals was 22 years, 51.9% were female and 29% were sex workers, suggesting a potential role for sexual transmission. The predominance of APOBEC3-type mutations and the estimated emergence time around mid-September 2023 imply recent sustained human-to-human transmission.