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Disease-associated B cells and immune endotypes shape adaptive immune responses to SARS-CoV-2 mRNA vaccination in human SLE

  • Caterina E. Faliti,
  • Trinh T. P. Van,
  • Fabliha A. Anam,
  • Narayanaiah Cheedarla,
  • M. Elliott Williams,
  • Ashish Kumar Mishra,
  • Sabeena Y. Usman,
  • Matthew C. Woodruff,
  • Geoff Kraker,
  • Martin C. Runnstrom,
  • Shuya Kyu,
  • Daniel Sanz,
  • Hasan Ahmed,
  • Midushi Ghimire,
  • Andrea Morrison-Porter,
  • Hannah Quehl,
  • Natalie S. Haddad,
  • Weirong Chen,
  • Suneethamma Cheedarla,
  • Andrew S. Neish,
  • John D. Roback,
  • Rustom Antia,
  • Jennifer Hom,
  • Christopher M. Tipton,
  • John M. Lindner,
  • Eliver Ghosn,
  • Surender Khurana,
  • Christopher D. Scharer,
  • Arezou Khosroshahi,
  • F. Eun-Hyung Lee,
  • Ignacio Sanz

摘要

Severe acute respiratory syndrome coronavirus 2 mRNA vaccination has reduced effectiveness in certain immunocompromised individuals. However, the cellular mechanisms underlying these defects, as well as the contribution of disease-induced cellular abnormalities, remain largely unexplored. In this study, we conducted a comprehensive serological and cellular analysis of patients with autoimmune systemic lupus erythematosus (SLE) who received the Wuhan-Hu-1 monovalent mRNA coronavirus disease 2019 vaccine. Our findings revealed that patients with SLE exhibited reduced avidity of anti-receptor-binding domain antibodies, leading to decreased neutralization potency and breadth. We also observed a sustained anti-spike response in IgDCD27 ‘double-negative (DN)’ DN2/DN3 B cell populations persisting during memory responses and with greater representation in the SLE cohort. Additionally, patients with SLE displayed compromised anti-spike T cell immunity. Notably, low vaccine efficacy strongly correlated with higher values of a newly developed extrafollicular B and T cell score, supporting the importance of distinct B cell endotypes. Finally, we found that anti-BAFF blockade through belimumab treatment was associated with poor vaccine immunogenicity due to inhibition of naive B cell priming and an unexpected impact on circulating T follicular helper cells.