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Distinct SIV-specific CD8+ T cells in the lymph node exhibit simultaneous effector and stem-like profiles and are associated with limited SIV persistence

  • Zachary Strongin,
  • Laurence Raymond Marchand,
  • Claire Deleage,
  • M. Betina Pampena,
  • Maria Andrea Cardenas,
  • Christian Michel Beusch,
  • Timothy N. Hoang,
  • Elizabeth A. Urban,
  • Mael Gourves,
  • Kevin Nguyen,
  • Gregory K. Tharp,
  • Stacey Lapp,
  • Andrew R. Rahmberg,
  • Justin Harper,
  • Perla M. del Rio Estrada,
  • Mauricio Gonzalez-Navarro,
  • Fernanda Torres-Ruiz,
  • Yara Andrea Luna-Villalobos,
  • Santiago Avila-Rios,
  • Gustavo Reyes-Teran,
  • Rafick Sekaly,
  • Guido Silvestri,
  • Deanna A. Kulpa,
  • Asier Saez-Cirion,
  • Jason M. Brenchley,
  • Steven E. Bosinger,
  • David Ezra Gordon,
  • Michael R. Betts,
  • Haydn T. Kissick,
  • Mirko Paiardini

摘要

Human immunodeficiency virus (HIV) cure efforts are increasingly focused on harnessing CD8+ T cell functions, which requires a deeper understanding of CD8+ T cells promoting HIV control. Here we identifiy an antigen-responsive TOXhiTCF1+CD39+CD8+ T cell population with high expression of inhibitory receptors and low expression of canonical cytolytic molecules. Transcriptional analysis of simian immunodeficiency virus (SIV)-specific CD8+ T cells and proteomic analysis of purified CD8+ T cell subsets identified TOXhiTCF1+CD39+CD8+ T cells as intermediate effectors that retained stem-like features with a lineage relationship with terminal effector T cells. TOXhiTCF1+CD39+CD8+ T cells were found at higher frequency than TCF1CD39+CD8+ T cells in follicular microenvironments and were preferentially located in proximity of SIV-RNA+ cells. Their frequency was associated with reduced plasma viremia and lower SIV reservoir size. Highly similar TOXhiTCF1+CD39+CD8+ T cells were detected in lymph nodes from antiretroviral therapy-naive and antiretroviral therapy-suppressed people living with HIV, suggesting this population of CD8+ T cells contributes to limiting SIV and HIV persistence.