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Human lung cancer harbors spatially organized stem-immunity hubs associated with response to immunotherapy

  • Jonathan H. Chen,
  • Linda T. Nieman,
  • Maxwell Spurrell,
  • Vjola Jorgji,
  • Liad Elmelech,
  • Peter Richieri,
  • Katherine H. Xu,
  • Roopa Madhu,
  • Milan Parikh,
  • Izabella Zamora,
  • Arnav Mehta,
  • Christopher S. Nabel,
  • Samuel S. Freeman,
  • Joshua D. Pirl,
  • Chenyue Lu,
  • Catherine B. Meador,
  • Jaimie L. Barth,
  • Mustafa Sakhi,
  • Alexander L. Tang,
  • Siranush Sarkizova,
  • Colles Price,
  • Nicolas F. Fernandez,
  • George Emanuel,
  • Jiang He,
  • Katrina Van Raay,
  • Jason W. Reeves,
  • Keren Yizhak,
  • Matan Hofree,
  • Angela Shih,
  • Moshe Sade-Feldman,
  • Genevieve M. Boland,
  • Karin Pelka,
  • Martin J. Aryee,
  • Mari Mino-Kenudson,
  • Justin F. Gainor,
  • Ilya Korsunsky,
  • Nir Hacohen

摘要

The organization of immune cells in human tumors is not well understood. Immunogenic tumors harbor spatially localized multicellular ‘immunity hubs’ defined by expression of the T cell-attracting chemokines CXCL10/CXCL11 and abundant T cells. Here, we examined immunity hubs in human pre-immunotherapy lung cancer specimens and found an association with beneficial response to PD-1 blockade. Critically, we discovered the stem-immunity hub, a subtype of immunity hub strongly associated with favorable PD-1-blockade outcome. This hub is distinct from mature tertiary lymphoid structures and is enriched for stem-like TCF7+PD-1+CD8+ T cells, activated CCR7+LAMP3+ dendritic cells and CCL19+ fibroblasts as well as chemokines that organize these cells. Within the stem-immunity hub, we find preferential interactions between CXCL10+ macrophages and TCF7CD8+ T cells as well as between mature regulatory dendritic cells and TCF7+CD4+ and regulatory T cells. These results provide a picture of the spatial organization of the human intratumoral immune response and its relevance to patient immunotherapy outcomes.