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Brca1 haploinsufficiency promotes early tumor onset and epigenetic alterations in a mouse model of hereditary breast cancer

  • Carman Man-Chung Li,
  • Alyssa Cordes,
  • Michael U. J. Oliphant,
  • S. Aidan Quinn,
  • Mayura Thomas,
  • Laura M. Selfors,
  • Francesca Silvestri,
  • Nomeda Girnius,
  • Gianmarco Rinaldi,
  • Jason J. Zoeller,
  • Hana Shapiro,
  • Christina Tsiobikas,
  • Kushali P. Gupta,
  • Shailja Pathania,
  • Aviv Regev,
  • Cigall Kadoch,
  • Senthil K. Muthuswamy,
  • Joan S. Brugge

摘要

Germline BRCA1 mutation carriers face a high breast cancer risk; however, the underlying mechanisms for this risk are not completely understood. Using a new genetically engineered mouse model of germline Brca1 heterozygosity, we demonstrate that early tumor onset in a Brca1 heterozygous background cannot be fully explained by the conventional ‘two-hit’ hypothesis, suggesting the existence of inherent tumor-promoting alterations in the Brca1 heterozygous state. Single-cell RNA sequencing and assay for transposase-accessible chromatin with sequencing analyses uncover a unique set of differentially accessible chromatin regions in ostensibly normal Brca1 heterozygous mammary epithelial cells, distinct from wild-type cells and partially mimicking the chromatin and RNA-level changes in tumor cells. Transcription factor analyses identify loss of ELF5 and gain of AP-1 sites in these epigenetically primed regions; in vivo experiments further implicate AP-1 and Wnt10a as strong promoters of Brca1-related breast cancer. These findings reveal a previously unappreciated epigenetic effect of Brca1 haploinsufficiency in accelerating tumorigenesis, advancing our mechanistic understanding and informing potential therapeutic strategies.