microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data
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期刊论文
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出版模式:
开放获取
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发表日期:
2024年2月5日
- Simone Zuffa,
- Robin Schmid,
- Anelize Bauermeister,
- Paulo Wender P. Gomes,
- Andres M. Caraballo-Rodriguez,
- Yasin El Abiead,
- Allegra T. Aron,
- Emily C. Gentry,
- Jasmine Zemlin,
- Michael J. Meehan,
- Nicole E. Avalon,
- Robert H. Cichewicz,
- Ekaterina Buzun,
- Marvic Carrillo Terrazas,
- Chia-Yun Hsu,
- Renee Oles,
- Adriana Vasquez Ayala,
- Jiaqi Zhao,
- Hiutung Chu,
- Mirte C. M. Kuijpers,
- Sara L. Jackrel,
- Fidele Tugizimana,
- Lerato Pertunia Nephali,
- Ian A. Dubery,
- Ntakadzeni Edwin Madala,
- Eduarda Antunes Moreira,
- Leticia Veras Costa-Lotufo,
- Norberto Peporine Lopes,
- Paula Rezende-Teixeira,
- Paula C. Jimenez,
- Bipin Rimal,
- Andrew D. Patterson,
- Matthew F. Traxler,
- Rita de Cassia Pessotti,
- Daniel Alvarado-Villalobos,
- Giselle Tamayo-Castillo,
- Priscila Chaverri,
- Efrain Escudero-Leyva,
- Luis-Manuel Quiros-Guerrero,
- Alexandre Jean Bory,
- Juliette Joubert,
- Adriano Rutz,
- Jean-Luc Wolfender,
- Pierre-Marie Allard,
- Andreas Sichert,
- Sammy Pontrelli,
- Benjamin S. Pullman,
- Nuno Bandeira,
- William H. Gerwick,
- Katia Gindro,
- Josep Massana-Codina,
- Berenike C. Wagner,
- Karl Forchhammer,
- Daniel Petras,
- Nicole Aiosa,
- Neha Garg,
- Manuel Liebeke,
- Patric Bourceau,
- Kyo Bin Kang,
- Henna Gadhavi,
- Luiz Pedro Sorio de Carvalho,
- Mariana Silva dos Santos,
- Alicia Isabel Pérez-Lorente,
- Carlos Molina-Santiago,
- Diego Romero,
- Raimo Franke,
- Mark Brönstrup,
- Arturo Vera Ponce de León,
- Phillip Byron Pope,
- Sabina Leanti La Rosa,
- Giorgia La Barbera,
- Henrik M. Roager,
- Martin Frederik Laursen,
- Fabian Hammerle,
- Bianka Siewert,
- Ursula Peintner,
- Cuauhtemoc Licona-Cassani,
- Lorena Rodriguez-Orduña,
- Evelyn Rampler,
- Felina Hildebrand,
- Gunda Koellensperger,
- Harald Schoeny,
- Katharina Hohenwallner,
- Lisa Panzenboeck,
- Rachel Gregor,
- Ellis Charles O’Neill,
- Eve Tallulah Roxborough,
- Jane Odoi,
- Nicole J. Bale,
- Su Ding,
- Jaap S. Sinninghe Damsté,
- Xue Li Guan,
- Jerry J. Cui,
- Kou-San Ju,
- Denise Brentan Silva,
- Fernanda Motta Ribeiro Silva,
- Gilvan Ferreira da Silva,
- Hector H. F. Koolen,
- Carlismari Grundmann,
- Jason A. Clement,
- Hosein Mohimani,
- Kirk Broders,
- Kerry L. McPhail,
- Sidnee E. Ober-Singleton,
- Christopher M. Rath,
- Daniel McDonald,
- Rob Knight,
- Mingxun Wang,
- Pieter C. Dorrestein
摘要
microbeMASST, a taxonomically informed mass spectrometry (MS) search tool, tackles limited microbial metabolite annotation in untargeted metabolomics experiments. Leveraging a curated database of >60,000 microbial monocultures, users can search known and unknown MS/MS spectra and link them to their respective microbial producers via MS/MS fragmentation patterns. Identification of microbe-derived metabolites and relative producers without a priori knowledge will vastly enhance the understanding of microorganisms’ role in ecology and human health.