<p>Membranes are ubiquitous in the living world. However, many of their physical properties are dominated by nonlinear effects, requiring computational approaches to model. Here we introduce a computational framework - PyMembrane - for simulating liquid and elastic membranes, designed to bridge the gap between accessibility, flexibility, and computational power. Built on a high-performance C++ backend with a user-friendly Python interface, it enables efficient setup, execution, and analysis of complex simulations. By leveraging a modular architecture and optimized data structures for unstructured triangulated meshes, PyMembrane delivers high computational efficiency for large-scale simulations while maintaining flexibility for customization and extension. Its standardized C++ interface ensures seamless integration of new features, including dynamic and out-of-equilibrium phenomena. With comprehensive documentation and ready-to-use templates for common simulation scenarios, PyMembrane enhances membrane modeling, providing a powerful tool for addressing a wide range of problems in physics, materials science, biology, and engineering.</p>

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A flexible framework for efficient simulations of elastic and liquid membranes

  • D. A. Matoz-Fernandez,
  • Siyu Li,
  • Monica Olvera de la Cruz,
  • Rastko Sknepnek

摘要

Membranes are ubiquitous in the living world. However, many of their physical properties are dominated by nonlinear effects, requiring computational approaches to model. Here we introduce a computational framework - PyMembrane - for simulating liquid and elastic membranes, designed to bridge the gap between accessibility, flexibility, and computational power. Built on a high-performance C++ backend with a user-friendly Python interface, it enables efficient setup, execution, and analysis of complex simulations. By leveraging a modular architecture and optimized data structures for unstructured triangulated meshes, PyMembrane delivers high computational efficiency for large-scale simulations while maintaining flexibility for customization and extension. Its standardized C++ interface ensures seamless integration of new features, including dynamic and out-of-equilibrium phenomena. With comprehensive documentation and ready-to-use templates for common simulation scenarios, PyMembrane enhances membrane modeling, providing a powerful tool for addressing a wide range of problems in physics, materials science, biology, and engineering.