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<p>Wild <i>Arachis</i> species exhibit abundant genetic diversity for peanut improvement. However, the evolutionary history of their genomes is unclear. Here, through comparative oligopainting, we establish a one-to-one correspondence between microscopically observed chromosomes and sequenced pseudomolecules of <i>Arachis duranensis</i>, <i>A. ipaensis</i>, and cultivated peanut, and determine the 10 homoeologous groups (Hgs) of the A, B, F, K, and H genomes. Analysis of the telomere-to-telomere (T2T) genome assembly of <i>A. hoehnei</i> reveals that its genome is a diverging form of the A genome and is designated as genome A’. In addition, the unique small chromosome A08 is originated from two inversions and a substantial contraction of A'08. We propose a genome evolution model of the <i>Arachis</i> genus, where A’ bridges the A and B genomes. We further report an artificial hexaploid peanut derived from a hybrid of cultivated peanut and <i>A. hoehnei</i>, and identify differentially expressed genes against web blotch in <i>A. hoehnei</i>.</p>

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Origin of small chromosome A08 and genome evolution of Arachis species

  • 期刊论文

  • 出版模式：

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  • 发表日期：

    2026年1月26日

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  • Pei Du,
  • Liuyang Fu,
  • Guoquan Chen,
  • Qian Wang,
  • Suoyi Han,
  • Xiaobo Wang,
  • Ziqi Sun,
  • Zhiyuan Zhou,
  • Xuemin Xu,
  • Hua Liu,
  • Chenyu Li,
  • Lijuan Miao,
  • Li Qin,
  • Jing Xu,
  • Zhongxin Zhang,
  • Zheng Zheng,
  • Wenzhao Dong,
  • Zengjun Qi,
  • Xinyou Zhang

摘要

Wild Arachis species exhibit abundant genetic diversity for peanut improvement. However, the evolutionary history of their genomes is unclear. Here, through comparative oligopainting, we establish a one-to-one correspondence between microscopically observed chromosomes and sequenced pseudomolecules of Arachis duranensis, A. ipaensis, and cultivated peanut, and determine the 10 homoeologous groups (Hgs) of the A, B, F, K, and H genomes. Analysis of the telomere-to-telomere (T2T) genome assembly of A. hoehnei reveals that its genome is a diverging form of the A genome and is designated as genome A’. In addition, the unique small chromosome A08 is originated from two inversions and a substantial contraction of A'08. We propose a genome evolution model of the Arachis genus, where A’ bridges the A and B genomes. We further report an artificial hexaploid peanut derived from a hybrid of cultivated peanut and A. hoehnei, and identify differentially expressed genes against web blotch in A. hoehnei.