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RNA-mediated double-strand break repair by end-joining mechanisms

  • Youngkyu Jeon,
  • Yilin Lu,
  • Margherita Maria Ferrari,
  • Tejasvi Channagiri,
  • Penghao Xu,
  • Chance Meers,
  • Yiqi Zhang,
  • Sathya Balachander,
  • Vivian S. Park,
  • Stefania Marsili,
  • Zachary F. Pursell,
  • Nataša Jonoska,
  • Francesca Storici

摘要

Double-strand breaks (DSBs) in DNA are challenging to repair. Cells employ at least three DSB-repair mechanisms, with a preference for non-homologous end joining (NHEJ) over homologous recombination (HR) and microhomology-mediated end joining (MMEJ). While most eukaryotic DNA is transcribed into RNA, providing complementary genetic information, much remains unknown about the direct impact of RNA on DSB-repair outcomes and its role in DSB-repair via end joining. Here, we show that both sense and antisense-transcript RNAs impact DSB repair in a sequence-specific manner in wild-type human and yeast cells. Depending on its sequence complementarity with the broken DNA ends, a transcript RNA can promote repair of a DSB or a double-strand gap in its DNA gene via NHEJ or MMEJ, independently from DNA synthesis. The results demonstrate a role of transcript RNA in directing the way DSBs are repaired in DNA, suggesting that RNA may directly modulate genome stability and evolution.