<p>The development of quick and affordable diagnostic methods is crucial for managing plant viral diseases. This study establishes a novel Recombinase Polymerase Amplification (RPA) assay for detecting mungbean yellow mosaic India virus (MYMIV) for the first time in wild <i>Vigna</i> germplasm. We designed and validated three primer pairs targeting the MYMIV coat protein gene. Using crude sap extracted with 0.5 M phosphate buffer—the most effective of ten lysis buffers tested—optimal amplification was achieved at 45 °C for 30 minutes. The RPA assay demonstrated exceptional sensitivity, detecting MYMIV in crude sap at a dilution of 10<sup>−</sup><sup>9</sup>, whereas conventional PCR failed to amplify from crude extracts. With purified DNA, RPA and PCR showed detection limits of 10<sup>−</sup><sup>7</sup> and 10<sup>−</sup><sup>6</sup>, respectively. The assay was highly specific, with no cross-reactivity against other legume-infecting viruses like dolichos yellow mosaic virus, horsegram yellow mosaic virus, and bean common mosaic virus. The entire RPA procedure, from sample to result, required only 60–90 minutes, offering a significant time saving over PCR (~3–3.5 hours). This optimized, crude sap-based RPA protocol provides a sensitive, specific, and practical tool for MYMIV detection, proving particularly valuable for resource-limited settings, field applications, and the identification of latent infections in wild <i>Vigna</i> germplasm.</p>

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Rapid crude sap-based detection of mungbean yellow mosaic India virus in wild Vigna using recombinase polymerase amplification

  • U. S. Thendral,
  • A. Rajashree,
  • B. Parameswari,
  • M. Elangovan,
  • Kuldeep Tripathi,
  • V. Celia Chalam

摘要

The development of quick and affordable diagnostic methods is crucial for managing plant viral diseases. This study establishes a novel Recombinase Polymerase Amplification (RPA) assay for detecting mungbean yellow mosaic India virus (MYMIV) for the first time in wild Vigna germplasm. We designed and validated three primer pairs targeting the MYMIV coat protein gene. Using crude sap extracted with 0.5 M phosphate buffer—the most effective of ten lysis buffers tested—optimal amplification was achieved at 45 °C for 30 minutes. The RPA assay demonstrated exceptional sensitivity, detecting MYMIV in crude sap at a dilution of 109, whereas conventional PCR failed to amplify from crude extracts. With purified DNA, RPA and PCR showed detection limits of 107 and 106, respectively. The assay was highly specific, with no cross-reactivity against other legume-infecting viruses like dolichos yellow mosaic virus, horsegram yellow mosaic virus, and bean common mosaic virus. The entire RPA procedure, from sample to result, required only 60–90 minutes, offering a significant time saving over PCR (~3–3.5 hours). This optimized, crude sap-based RPA protocol provides a sensitive, specific, and practical tool for MYMIV detection, proving particularly valuable for resource-limited settings, field applications, and the identification of latent infections in wild Vigna germplasm.