Let \(\mathfrak {n}=\mathfrak {p}^r\) be a prime power ideal of \(\mathbb {F}_q[T]\) with \(r\ge 2\) . We study the rational torsion subgroup \(\mathcal {T}(\mathfrak {p}^r)\) of the Drinfeld modular Jacobian \(J_0(\mathfrak {p}^r)\) . We prove that the prime-to- \(q(q-1)\) part of \(\mathcal {T}(\mathfrak {p}^r)\) is equal to that of the rational cuspidal divisor class group \(\mathcal {C}(\mathfrak {p}^r)\) of the Drinfeld modular curve \(X_0(\mathfrak {p}^r)\) . As we completely computed the structure of \(\mathcal {C}(\mathfrak {p}^r)\) , it also determines the structure of the prime-to- \(q(q-1)\) part of \(\mathcal {T}(\mathfrak {p}^r)\) .