A machine learning computational framework develops a novel ferroptosis-related signature for improving clinical outcome in colorectal cancer
摘要
In the field of gastrointestinal malignancies, colorectal cancer (CRC) is a globally prevalent and lethal disease. An increasing amount of research indicates that ferroptosis plays a role in various aspects of malignant tumor progression, indicating its considerable potential for cancer diagnosis and therapy. For this research, we extracted 564 ferroptosis-related genes (FRGs) from the FerrDb V2 database, and devised a machine learning computational framework to develop a novel ferroptosis-related survival prognostic model for CRC patients. A riskScore was calculated for each CRC patient, and the CRC patients were divided into two groups: those at low-risk group and those at high-risk group. The model comprises seven differentially expressed ferroptosis-related genes (DRD4, HOTAIR, ASNS, GSTM1, TFAP2C, PANX2, and HAMP), which can function as standalone prognostic markers for CRC patients. Analysis of survival data revealed that in the TCGA-COAD training cohort, patients classified within the high-risk group showed a notably poorer outcome compared to those in the low-risk group (P < 0.001), and a similar phenomenon was observed in the validation cohorts, including the GSE17536 cohort (P = 0.032) and GSE29621 cohort (P = 0.011). Additionally, we observed differences in immune infiltration and immune function among the different risk groups. Notably, the high-risk group demonstrated reduced sensitivity to most commonly used chemotherapeutic drugs. Therefore, this molecular diagnostic model is proposed as a means of assessing the prognostic risk of CRC patients, providing new perspectives and potential candidates for immune-enhancing therapies for CRC.