<p>Lipase <i>Bacillus licheniformis</i> (LipA<sub><i>B.licheniformis</i></sub>) is an enzyme that can be widely used in industrial applications due to its desired properties. The LipA<sub><i>B.licheniformis</i></sub> activity is modulated by the catalytic triad as it does not have a lid and its active site is exposed under solvent. The <i>in-vitro</i> and <i>in-silico</i> analyses were conducted to identify the catalytic triad of LipA<sub><i>B.licheniformis</i></sub> through its activity and binding affinity after mutation. Site-directed mutagenesis was performed at the hypothesized catalytic triad (Ser-77, Asp-129, and His-152), followed by the measurement of lipase activity. The binding free energies of LipA<sub><i>B.licheniformis</i></sub> and its mutant with <i>p</i>NPL were identified through molecular docking. Based on the findings, the activity of the LipA<sub><i>B.licheniformis</i></sub> was devoid and its binding affinity became 0&#xa0;kcal/mol after mutation induced at the hypothesized catalytic triad. The hypothesis was verified as the actual catalytic triad residues of LipA<sub><i>B.licheniformis</i></sub> were Ser-77, Asp-129 and His-152. Mutations on these 3 residues caused loss of catalytic mechanism, thus the substrate cannot be hydrolysed. The substitution of the catalytic triad changed the LipA<sub><i>B.licheniformis</i></sub> conformation, affecting the flexibility and stability of the active site. This study provided strong evidence to prove the identification of the actual catalytic triad of LipA<sub><i>B.licheniformis</i></sub>, facilitating rational design to improve its performance.</p>

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Bacillus licheniformis lipase: Catalytic triad study through site-directed mutagenesis and in silico investigations

  • Ammar Khazaal Kadhim Almansoori,
  • Nidyaletchmy Subba Reddy,
  • Lo Hui Yu,
  • Ng Siau Ning,
  • Fatin Irdina Faiz,
  • Rashidah Abdul Rahim

摘要

Lipase Bacillus licheniformis (LipAB.licheniformis) is an enzyme that can be widely used in industrial applications due to its desired properties. The LipAB.licheniformis activity is modulated by the catalytic triad as it does not have a lid and its active site is exposed under solvent. The in-vitro and in-silico analyses were conducted to identify the catalytic triad of LipAB.licheniformis through its activity and binding affinity after mutation. Site-directed mutagenesis was performed at the hypothesized catalytic triad (Ser-77, Asp-129, and His-152), followed by the measurement of lipase activity. The binding free energies of LipAB.licheniformis and its mutant with pNPL were identified through molecular docking. Based on the findings, the activity of the LipAB.licheniformis was devoid and its binding affinity became 0 kcal/mol after mutation induced at the hypothesized catalytic triad. The hypothesis was verified as the actual catalytic triad residues of LipAB.licheniformis were Ser-77, Asp-129 and His-152. Mutations on these 3 residues caused loss of catalytic mechanism, thus the substrate cannot be hydrolysed. The substitution of the catalytic triad changed the LipAB.licheniformis conformation, affecting the flexibility and stability of the active site. This study provided strong evidence to prove the identification of the actual catalytic triad of LipAB.licheniformis, facilitating rational design to improve its performance.