<p>We demonstrate here a pulse sequence based on rotational-echo double resonance (REDOR) that can help distinguish resonances based on the <InlineEquation ID="IEq1"> <EquationSource Format="TEX">\(\psi\)</EquationSource> </InlineEquation>-torsion angle, which allows it to distinguish <InlineEquation ID="IEq2"> <EquationSource Format="TEX">\(\alpha\)</EquationSource> </InlineEquation>-helical and <InlineEquation ID="IEq3"> <EquationSource Format="TEX">\(\beta\)</EquationSource> </InlineEquation>-sheet regions in solid proteins under magic-angle-spinning. The method relies on conformation-dependent differences in distances between an amide <InlineEquation ID="IEq4"> <EquationSource Format="TEX">\(^{1}\)</EquationSource> </InlineEquation>H and amide <InlineEquation ID="IEq5"> <EquationSource Format="TEX">\(^{15}\)</EquationSource> </InlineEquation>N nuclei not covalently attached to it. Dephasing from this remote <InlineEquation ID="IEq6"> <EquationSource Format="TEX">\(^{15}\)</EquationSource> </InlineEquation>N nucleus is obtained in presence of the much stronger one-bond dipole-dipole coupling by using the <InlineEquation ID="IEq7"> <EquationSource Format="TEX">\(\mathrm {\theta }\)</EquationSource> </InlineEquation>-REDOR sequence. Experiments are demonstrated on perdeuterated (and 70% backexchanged) sample of uniformly <InlineEquation ID="IEq8"> <EquationSource Format="TEX">\(^{13}\)</EquationSource> </InlineEquation>C, <InlineEquation ID="IEq9"> <EquationSource Format="TEX">\(^{15}\)</EquationSource> </InlineEquation>N labeled model protein GB1 at the magic-angle spinning frequency of 41.67&#xa0;kHz. This method will be useful in simplifying chemical-shift assignments in proteins where the structure is already known, and we anticipate a direct application in determining secondary structures without relying on <InlineEquation ID="IEq10"> <EquationSource Format="TEX">\(^{13}\)</EquationSource> </InlineEquation>C chemical-shifts.</p>

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Conformation-selective detection of residues in solid proteins under magic-angle-spinning

  • Pragyan P. Parida,
  • Pravin P. Taware,
  • Kaustubh R. Mote

摘要

We demonstrate here a pulse sequence based on rotational-echo double resonance (REDOR) that can help distinguish resonances based on the \(\psi\) -torsion angle, which allows it to distinguish \(\alpha\) -helical and \(\beta\) -sheet regions in solid proteins under magic-angle-spinning. The method relies on conformation-dependent differences in distances between an amide \(^{1}\) H and amide \(^{15}\) N nuclei not covalently attached to it. Dephasing from this remote \(^{15}\) N nucleus is obtained in presence of the much stronger one-bond dipole-dipole coupling by using the \(\mathrm {\theta }\) -REDOR sequence. Experiments are demonstrated on perdeuterated (and 70% backexchanged) sample of uniformly \(^{13}\) C, \(^{15}\) N labeled model protein GB1 at the magic-angle spinning frequency of 41.67 kHz. This method will be useful in simplifying chemical-shift assignments in proteins where the structure is already known, and we anticipate a direct application in determining secondary structures without relying on \(^{13}\) C chemical-shifts.