<p>In <i>Saccharomyces cerevisiae</i>, the AUG codon typically signals translation initiation to set an open reading frame, with a preference for the A<sup>− 3</sup>AA/U<sup>− 1</sup>(AUG)U<sup>+ 4</sup> sequence context. The mutant eIF5<sup>G31R</sup> or eIF2β<sup>S264Y</sup> proteins cause translation initiation fidelity defect by initiating translation at a near cognate UUG codon, in addition to the AUG start codon (suppressor of initiation codon; Sui¯ phenotype). However, the critical role of the − 3 to − 1 sequences in selecting the UUG start codon by these Sui¯ mutants is not fully explored. Different <i>HIS4</i><sup><i>UUG</i></sup><i>-LacZ</i> reporter constructs were made with UUG as the start codon and varied nucleotides at the − 3 and − 2 positions or individually at -1 positions. These constructs were transformed to yeast cells having eIF5<sup>G31R</sup> or eIF2β<sup>S264Y</sup> mutation, and the β-galactosidase activity was measured. The <i>HIS4</i><sup><i>UUG</i></sup><i>-LacZ</i> transcripts carrying a purine (A/G) at the − 3 position showed higher reporter activity than those with a pyrimidine (U/C). Additionally, purines were favored at the − 1 position within an AA (− 3 and − 2) context for efficient UUG start codon selection. Our findings demonstrate that UUG start codon recognition by Sui¯ mutants eIF5<sup>G31R</sup> and eIF2β<sup>S264Y</sup> is greatly influenced by the surrounding nucleotide context, each showing distinct context preferences. This highlights the nuanced role of sequence context in the near-cognate UUG codon initiation by the Sui¯ mutants.</p> Graphical Abstract <p></p>

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Translation Initiation Fidelity Defective Mutations in eIF5 and eIF2β Show Distinct Sensitivity to the Sequence Context for Recognition of the UUG Start Codon

  • Anup Kumar Ram,
  • Tanaya Kole,
  • Pankaj V. Alone

摘要

In Saccharomyces cerevisiae, the AUG codon typically signals translation initiation to set an open reading frame, with a preference for the A− 3AA/U− 1(AUG)U+ 4 sequence context. The mutant eIF5G31R or eIF2βS264Y proteins cause translation initiation fidelity defect by initiating translation at a near cognate UUG codon, in addition to the AUG start codon (suppressor of initiation codon; Sui¯ phenotype). However, the critical role of the − 3 to − 1 sequences in selecting the UUG start codon by these Sui¯ mutants is not fully explored. Different HIS4UUG-LacZ reporter constructs were made with UUG as the start codon and varied nucleotides at the − 3 and − 2 positions or individually at -1 positions. These constructs were transformed to yeast cells having eIF5G31R or eIF2βS264Y mutation, and the β-galactosidase activity was measured. The HIS4UUG-LacZ transcripts carrying a purine (A/G) at the − 3 position showed higher reporter activity than those with a pyrimidine (U/C). Additionally, purines were favored at the − 1 position within an AA (− 3 and − 2) context for efficient UUG start codon selection. Our findings demonstrate that UUG start codon recognition by Sui¯ mutants eIF5G31R and eIF2βS264Y is greatly influenced by the surrounding nucleotide context, each showing distinct context preferences. This highlights the nuanced role of sequence context in the near-cognate UUG codon initiation by the Sui¯ mutants.

Graphical Abstract