<p>Water table management such as temporal flooding is an important strategy for influencing vegetation development and creating suitable habitat for wildlife in managed wetland systems. Water table fluctuations can also affect soil carbon and nutrient cycling through changes in abiotic soil properties, plant traits and soil microbial communities, but research on the effect of temporal flooding on these relations is limited. Here we tested the hypothesis that winter inundation leads to a plant community with more fast-growth-related plant traits, a bacterial-dominated soil microbial community, and lower soil organic carbon stocks compared to a year-round dry grassland. We compared soil and vegetation of winter-inundated and non-inundated grassland in a Dutch-managed wetland area. In contrast to our hypothesis, we found that winter inundation results in plant communities with more slow-growth-related traits and microbial communities more dominated by fungi, compared to non-inundated grassland. We found no difference between shallow soil organic carbon stocks, carbon-to-nitrogen ratios or nitrogen-to-phosphorous ratios. Winter inundation did, however, change the relationship between soil and vegetation properties and soil carbon stocks, as well as soil nutrient ratios. While soil carbon stocks in non-inundated grassland were explained by abiotic soil and vegetation properties, soil carbon stocks were only explained by microbial properties in winter-inundated grasslands. These findings show that winter inundation can be used for vegetation and wildlife management with limited effects on soil carbon stocks.</p>