<p>The interaction of metal ions with nucleic acids was studied by determining the initial binding sites of Ag<sup>+</sup> ions at unmodified B-DNA by NMR spectroscopy. In particular, NMR spectra were recorded of the Dickerson-Drew dodecamer sequence in the presence of different ratios of Ag<sup>+</sup> ions to DNA. The data indicate that the coordination of the first three Ag<sup>+</sup> ions per duplex preferentially takes place inside the B-DNA helix rather than at other possible binding sites such as the negatively charged phosphate backbone and/or the endocyclic N7 position of purine residues. Larger DNA aggregates are formed in the presence of excess Ag<sup>+</sup> ions, as indicated by the formation of a precipitate and by significant changes in the circular dichroism spectra. As shown by a titration with chloride ions, the Ag<sup>+</sup> ions are only loosely bound to the&#xa0;nucleic acids and can be released by precipitation of AgCl.</p> Graphical Abstract <p></p>

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Determination of silver(I)-binding sites in canonical B-DNA by NMR spectroscopy

  • Tabea Lenz,
  • Uroš Javornik,
  • Marian Hebenbrock,
  • Janez Plavec,
  • Jens Müller

摘要

The interaction of metal ions with nucleic acids was studied by determining the initial binding sites of Ag+ ions at unmodified B-DNA by NMR spectroscopy. In particular, NMR spectra were recorded of the Dickerson-Drew dodecamer sequence in the presence of different ratios of Ag+ ions to DNA. The data indicate that the coordination of the first three Ag+ ions per duplex preferentially takes place inside the B-DNA helix rather than at other possible binding sites such as the negatively charged phosphate backbone and/or the endocyclic N7 position of purine residues. Larger DNA aggregates are formed in the presence of excess Ag+ ions, as indicated by the formation of a precipitate and by significant changes in the circular dichroism spectra. As shown by a titration with chloride ions, the Ag+ ions are only loosely bound to the nucleic acids and can be released by precipitation of AgCl.

Graphical Abstract