<p>Dark-fermentative hydrogen is promising but constrained by acidification, mixed-acid by-products, and competition for reducing equivalents. <i>Enterobacter aerogenes</i> IAM1183, a rapidly growing and substrate-flexible facultative anaerobe, was used as the H<sub>2</sub>-producing chassis. A unified benchmark was then established to systematically redirect flux along three levers: deleting the pyruvate formate-lyase-associated <i>pflAB</i> locus (Δ<i>pflAB</i>), enlarging reducing power/electron transfer by overexpressing <i>pntA</i> or <i>fdx</i>, and deleting phosphoenolpyruvate carboxylase <i>ppc</i> (Δ<i>ppc</i>) to probe pyruvate-node pressure. In 20&#xa0;h glucose fermentations, H<sub>2</sub> yield increased by 38.0% in Ea/<i>pntA</i>, 32.8% in Ea/<i>fdx</i>, and 31.3% in Δ<i>pflAB</i>, whereas Δ<i>ppc</i> lowered H<sub>2</sub> yield by 10.5%. Intracellular NADH/NAD<sup>+</sup> increased by 137% in Ea/<i>pntA</i> and by approximately 51% in Δ<i>pflAB</i>. In Δ<i>pflAB</i>, formate fell below HPLC detection, endpoint pH was 6.06 versus 4.70 in WT, and final biomass increased by approximately 50%, consistent with a strong apparent shift away from detectable formate-associated H<sub>2</sub> production under the present batch condition. Shifts toward acetoin and 2,3-butanediol across engineered strains indicate residual NADH sinks accompanying redox gains. Together, these side-by-side data distill actionable rules: alleviate acid load, expand reducing capacity, and constrain NADH sinks. They also nominate Δ<i>pflAB</i> combined with <i>pntA</i> or <i>fdx</i> overexpression as a promising design for future validation under pH-controlled and gas-removal conditions. This integrated evaluation clarifies how de-acidification, redox reinforcement, and carbon redistribution jointly reshape endpoint H<sub>2</sub> phenotypes in <i>E. aerogenes</i>, providing a coherent platform for future strain-and-process co-optimization of dark-fermentative biohydrogen production.</p>

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Redox-centric metabolic rewiring for dark-fermentative hydrogen production in Enterobacter aerogenes

  • Gengran Zhai,
  • Qingyao Jiang,
  • Yilin Ding,
  • Ruoxuan Bai,
  • Jiale Chen,
  • Fangxu Xu,
  • Hongxin Zhao,
  • Hongwei Fu

摘要

Dark-fermentative hydrogen is promising but constrained by acidification, mixed-acid by-products, and competition for reducing equivalents. Enterobacter aerogenes IAM1183, a rapidly growing and substrate-flexible facultative anaerobe, was used as the H2-producing chassis. A unified benchmark was then established to systematically redirect flux along three levers: deleting the pyruvate formate-lyase-associated pflAB locus (ΔpflAB), enlarging reducing power/electron transfer by overexpressing pntA or fdx, and deleting phosphoenolpyruvate carboxylase ppcppc) to probe pyruvate-node pressure. In 20 h glucose fermentations, H2 yield increased by 38.0% in Ea/pntA, 32.8% in Ea/fdx, and 31.3% in ΔpflAB, whereas Δppc lowered H2 yield by 10.5%. Intracellular NADH/NAD+ increased by 137% in Ea/pntA and by approximately 51% in ΔpflAB. In ΔpflAB, formate fell below HPLC detection, endpoint pH was 6.06 versus 4.70 in WT, and final biomass increased by approximately 50%, consistent with a strong apparent shift away from detectable formate-associated H2 production under the present batch condition. Shifts toward acetoin and 2,3-butanediol across engineered strains indicate residual NADH sinks accompanying redox gains. Together, these side-by-side data distill actionable rules: alleviate acid load, expand reducing capacity, and constrain NADH sinks. They also nominate ΔpflAB combined with pntA or fdx overexpression as a promising design for future validation under pH-controlled and gas-removal conditions. This integrated evaluation clarifies how de-acidification, redox reinforcement, and carbon redistribution jointly reshape endpoint H2 phenotypes in E. aerogenes, providing a coherent platform for future strain-and-process co-optimization of dark-fermentative biohydrogen production.