In this note we study estimates from below of the single radius spherical discrepancy in the setting of compact two-point homogeneous spaces. Namely, given a d-dimensional manifold \(\mathcal {M}\) endowed with a distance \(\rho \) so that \((\mathcal {M}, \rho )\) is a two-point homogeneous space and with the Riemannian measure \(\mu \) , we provide conditions on r such that if \(D_r\) denotes the discrepancy of the ball of radius r, then, for an absolute constant \(C>0\) and for every set of points \(\{x_j\}_{j=1}^N\) , one has \(\int _{\mathcal {M}} |D_{r}(x)|^2\, d\mu (x)\geqslant C N^{-1-\frac{1}{d}}\) . The conditions on r that we have depend on the dimension d of the manifold and cannot be achieved when \(d \equiv 1 \ ( {\text {mod}}4)\) . Nonetheless, we prove a weaker estimate for such dimensions as well.